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BIOL2020FINCH42215 BIOL

Investigating sex-based differences in pathogen resistance and immune responses in the fathead minnow (Pimephales promelas)

Type: Undergraduate
Author(s): Miranda Finch Biology Lynsey Malin Biology Leah Thornton Hampton Biology
Advisor(s): Marlo Jeffries Biology

Studies have shown that males and females differ with regard to their ability to survive pathogen infections. The fathead minnow is a newly developed model for immunotoxicity; however, few studies have compared male and female immune responses following pathogen exposure. The purpose of this study was to examine sex-based differences in pathogen resistance and immune responses following exposure to a pathogen in adult fathead minnows (Pimephales promelas). To accomplish this, fish were bacterially infected with Yersinia ruckeri and the immune system’s ability to respond was monitored. Additionally, genes that are known to be expressed during the immune response initiation were measured quantitatively, providing insight into the molecular effect in minnows. At the whole organism level, male fish were less able to survive pathogen infection relative to female fish. At the tissue level, both male and female pathogen-injected fish had decreased hematocrit percentages compared to the fish injected with a saline solution, but did not differ from each other. At the molecular level, increased gene expression of interleukin 1β was seen in pathogen-injected males compared to pathogen-injected females and both sham-injected sexes, indicating that pathogen-injected males mounted a larger inflammatory response at the molecular level. Taken together, this evidence suggests that the increased mortality observed among males earlier in the exposure to the pathogen may be due to the upregulated inflammatory response rather than the effects of the pathogen itself.

(Presentation is private)

BIOL2020KELLY29623 BIOL

Discovering Novel Genes Important for Survival Against Reactive Oxygen Species in Bacillus anthracis

Type: Undergraduate
Author(s): Taylor Kelly Biology
Advisor(s): Shauna McGillivray Biology

Bacillus anthracis is a gram-positive, spore-forming bacterium and the causative agent of the deadly disease anthrax. The B. anthracis genome consists of chromosomal genes and the pXO1 and pXO2 plasmids that strongly contribute to the bacteria’s deadly nature. While the virulence factors associated with the plasmids have been extensively studied, we believe there are still undiscovered chromosomal genes that may also have important virulence factors. To identify novel chromosomal genes associated with B. anthracis virulence, we screened a transposon mutant library of B. anthracis Sterne strain for increased sensitivity to reactive oxygen species. Reactive oxygen species, such as hydrogen peroxide, have many functions in mammalian immune defenses and wild type B. anthracis is able to subvert this host defense. Sensitivity to reactive oxygen species was tested through in vitro hydrogen peroxide assays and after several rounds of screening, eight mutants were confirmed as susceptible. We next tested whether any of these mutants were attenuated in vivo using our invertebrate animal model, Galleria mellonella and found several mutants with decreased virulence. We are currently working on determining the location of the transposon insertion to find which chromosomal gene is disrupted. This could lead to the discovery of novel B. anthracis virulence genes and eventually possible treatment targets for future anthrax outbreaks and attacks.

(Presentation is private)

BIOL2020LAMANTEER44511 BIOL

Comparison of Swim Performance Assays for Evaluating the Cardiovascular Fitness of Larval Fathead Minnows

Type: Undergraduate
Author(s): Gabriella Lamanteer Biology
Advisor(s): Marlo Jeffries Biology

The swim performance assay is a behavioral assessment used to measure cardiovascular function in fish. Previously, the laminar flow assay (LFA) has been the standard method of assessing swim performance in adult fish to measure their cardiac output. The spinning task assay (STA) is a novel, accessible method of assessing swim performance; however, previous studies have not compared the two methods. Additionally, there is little documentation of swim performance in larval fish, a more sensitive study subject for toxicological research. Therefore, the aim of this research is to compare the swim performance of fish in the LFA to those in the STA to determine which method is better for assessing swim performance in larval fathead minnows (Pimephales promelas). In this study, the percent of fish that fail to swim in the LFA is inversely proportional to the age of the fish, but in the STA, there is no correlation between percent failure and fish age. Results show that as fish increase in size, swim performance in the LFA improves, making it a more representative, predictable assay. Results from the STA indicate that swim performance in fish does not improve with size and performance in the STA is not correlated with performance in the LFA. Ucrit values from the LFA have less variation than those from the STA. The results of this study show that the LFA is a more suitable modality for assessing swim performance in larval fathead minnows.

(Presentation is private)

CHEM2020BUDENSIEK51413 CHEM

Fabrication and Characterization of Sub-Micron Plant-Derived Silicon Nanoparticles for Drug Delivery

Type: Undergraduate
Author(s): Hailey Budensiek Chemistry & Biochemistry
Advisor(s): Jeffery Coffer Chemistry & Biochemistry

Porous silicon nanoparticles exhibit great potential as drug delivery vectors due to their high surface-area-to-volume ratio allowing for increased efficacy of surface functionalization and therapeutic loading capabilities. This data set demonstrates the fabrication of a class of plant-derived materials which are sub-micron in size and capable of functionalization with primary amine groups through the addition of APTES.
The production of porous silicon particles (pSi) is achieved through magnesiothermic reduction of silica containing Tabasheer powder isolated from the nodal joints of the Bambuseae plant. Efficacy of this reduction is evaluated using techniques including X-ray diffraction and Energy-dispersive X-ray spectroscopy which show successful reduction of silica starting material to porous silicon.
High energy ball milling followed by reduction is used to produce pSi particles of sub-micrometer size while also allowing for a significantly higher yield (~90%) of material than previous methods. Particle size is confirmed via electron microscopy and dynamic light scattering (DLS).
Following reduction, surface functionalization of silicon nanoparticles with primary amine groups was carried out using a 4% (v/v) solution of APTES in acetone. The evaluation of this functionalization was conducted using techniques including zeta potential and infrared spectroscopy (IR). Zeta potential values are found to be approximately -10 mV. This data demonstrates successful amino silanization.
The results achieved through these methods suggest successful fabrication of pSi nanoparticles and subsequent functionalization for future use as a drug delivery vector.

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CHEM2020GOEHRING48218 CHEM

Creating Biocompatible Polymers Loaded With Porous Silicon Potentially For Drug Delivery

Type: Undergraduate
Author(s): Lexi Goehring Chemistry & Biochemistry
Advisor(s): Jeff Coffer Chemistry & Biochemistry

Drug delivery is the process by which medications are administered to the body. This is complex due to the difficulty of determining compounds that have the proper biocompatibility and permissibility to our human cells. Many medications are taken orally; however, there are advantages to administering medication subcutaneously or by inserting it in the inner corner of the eye. Porous films made out of biocompatible polymers provide a good platform for drug delivery as they have the ability to be loaded with plant derived porous Silicon. Functionalizing the porous silicon using (3-aminopropyl)triethoxysilane and glutaraldehyde can be done in an attempt to covalently attach particles to the film which is important for embedding them into the pores of the film. Porous silicon has biocompatible properties and can be loaded with drugs then modified to alter the release of those drugs in the body. This method has the potential to be a useful drug delivery method due to the biocompatible and biodegradable properties of the material and the ability to manipulate the material in order to maximize drug release.

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CHEM2020SEGURA63908 CHEM

Synthesizing a vaccine for the treatment of addiction to the fentanyl opioid

Type: Undergraduate
Author(s): Carolina Segura Biology
Advisor(s): Jean-Luc Montchamp Chemistry & Biochemistry

The objective of this project is to make a vaccine that will negate the effects of the powerful opioid fentanyl in the long term. Fentanyl is a strong synthetic opioid that is 50 to 100 times more potent than morphine. According to the CDC, there were over 70,000 deaths due to street drug overdoses, which has increased in the last ten years. 40 % of these deaths are related to fentanyl overdoses, therefore it is imperative that approaches are developed to combat this alarming increase in deaths. The vaccine against fentanyl will be synthesized out of molecules that will take advantage of fentanyl’s amide functional group to be hydrolyzed into safe byproducts. Any patient that is administered with the vaccine, will not feel the effects of the opioid because the immune system will hydrolyze the drug as soon as it enters. This project will exploit the properties of both catalytic antibodies (CAbs) and transition state analogs. The Cabs will trigger an immune response to attract phagocytic cells, such as macrophages to phagocytose pathogens and eliminate them from the system. However, if the molecule resembles the transition-state of fentanyl hydrolysis, then the antibodies can cleave the fentanyl in a fast and efficient manner due to their catalytic properties. Therefore, after immunization, a person who is addicted to fentanyl would no longer feel the effects of the opioid because it will be degraded as an immune response is triggered, creating a long-term possible solution to one factor of the “opioid crisis.”

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COSC2020SMITH56615 COSC

Sir Stan's Well Rounded Adventure

Type: Undergraduate
Author(s): Brooke Smith Computer Science Nick Bonavia Computer Science Sellars Levy Computer Science Shane Mitchell Computer Science David Rasberry Computer Science Westen Riley Computer Science
Advisor(s): Michael Scherger Computer Science

Sir Stanley’s Well Rounded Adventure is a mobile game that is meant to help educate children ages 7-11 about living a healthy lifestyle. Childhood obesity is on the rise, and while we cannot control the lifestyle choices others make, we can help bring education to the younger masses through a medium that they can enjoy: video games. Sir Stanley’s Well Rounded Adventure will help children learn valuable lessons about nutrition and physical activity through a series of unique mini-games, in-game tutorials, and in-game achievements. Our goal is to make this information that has been provided to us by TCU’s nutrition department both accessible and easy to understand for the younger generation.

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ENSC2020ISHIMWE15686 ENSC

The potential of cost-effective UAV technology to replace costly technologies in Precision Agriculture

Type: Undergraduate
Author(s): Benite Ishimwe Environmental Sciences
Advisor(s): Esayas Gebremichael Geological Sciences

The potential of cost-effective UAV technology to replace costly technologies in Precision Agriculture

Abstract

The use of satellite and aerial remote sensing for agricultural applications has exponentially expanded since the past decades. One such agricultural application that is highly dependent on the use of advanced hyperspectral and multispectral remote sensing and GPS technology to boost crop harvests and viability, while reducing the number and amount of inputs, like water, fertilizer, land, and others required to grow crops, is Precision Agriculture (PA). Although PA has been credited for the increased crop yield and productivity in the United States and worldwide, its dependence on costly technologies has been a major hurdle for it to be used by small-scale farmers locally and globally. This project aims to reduce the dependence of PA on costly and complex remote sensing technologies through the use of alternate and cheaper options such as low/medium-priced Unmanned Aerial Systems (UAV), popularly known as drones, equipped with only high-resolution cameras capable of, to a certain extent, mimicking the functionalities that are offered by costly technologies. Such low-cost technology is anticipated to enhance the efficiency and profitability of the agriculture sector through the provision of easier technologies to small-scale farmers. The research project is currently being implemented on a wheat farm owned by Davis farms (Grandview, Texas). Multi-temporal (at different growing stages) UAV imageries using DJI Mavic air 3D are being acquired with the purpose of producing 3D maps for qualitative and quantitative analysis. This includes crop-health assessment through the generation of crop-health indicator indices such as the Normalized Difference Vegetation Index (NDVI). A similar analysis from high-resolution multispectral imagery of the area, acquired from commercial satellite operators, will be undertaken and the accuracy, validity, and reliability of the UAV-based PA application will be assessed.

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ENSC2020ISHIMWE6062 ENSC

The effects of increased population growth on Rwanda’s forest ecosystem

Type: Undergraduate
Author(s): Benite Ishimwe Environmental Sciences
Advisor(s): Esayas Gebremichael Geological Sciences

The effects of increased population growth on Rwanda’s forest ecosystem.
Rwanda is a country in Central-East Africa and one of the smallest countries on the African continental, being only 10,169 mi²/ 26340 sq. Km. Rwanda is a landlocked country bordered by Uganda, Tanzania, Burundi, and the Democratic Republic of the Congo. The current population of Rwanda is 12,830,205 as of 2020, based on the latest United Nations data with a population density of 525 per Km2 which equates to about 1,360 people per mi2 with 17.6 % of the population living in urban centers.
Rwanda forests have historically played a very significant role in the economy and livelihoods of its population through tourism, energy, and other industrial purposes. They provide around 86% of the primary energy source mainly as domestic cooking energy. Rwanda experienced 50.9% total forest loss since 1990, in order to address this deforestation and imbalance in wood supply/demand, Rwanda has over the years taken a consistent stance on increasing the forest cover by 30% by 2020. With growing population, this case study is going to analyze how population growth in Rwanda has affected forest cover and biodiversity. The study will integrate available geospatial datasets such as census, infrastructure, and satellite imagery to assess the impact of population growth on deforestation.

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ENSC2020LAM11910 ENSC

Evaluating the Properties of Coffee Derived Carbon-Based Materials for the Removal of Lead from Contaminated Water

Type: Undergraduate
Author(s): Amy Lam Environmental Sciences
Advisor(s): Omar Harvey Geological Sciences

Americans generate about 12.6 million kilograms of spent coffee grounds every day. 90% of that will end up in a landfill. However, this waste stream is a potential starting material that can be used for engineering purposes and to address issues like climate change and water pollution. For example, initial research has shown that charring (burning) the grounds at 350℃ improved its lead removal abilities. My research will convert spent coffee grounds to carbon-based materials by charring (burning) them at 350oC, 450oC, and 650oC to investigate how fast they can remove the lead. My research will also explore how activating the charred coffee grounds with nitric acid (HNO3) will enhance its capacity for lead removal and how the rate at which the materials can remove it.

(Presentation is private)