PHYS2025KAZA26766 PHYS
Type: Undergraduate
Author(s):
Shriya Kaza
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: SecondFloor, Table 7, Position 2, 11:30-1:30
View PresentationAfter the COVID-19 pandemic, over 40 million children worldwide are at risk of measles due to delayed vaccination and temporary SARS-CoV-2 viral dominance. The lasting immunosuppression caused by the disease presents a major health threat, and treatment options are urgently needed, especially for low- and middle-income countries. The manuscript by Cox et al. (2024) explores features of canine distemper virus (CDV) in ferrets, using this model as a surrogate for measles to evaluate two possible antiviral treatments, ERDRP-0519 and GHP-88309. Ferrets were infected with a lethal challenge of CDV and treated with either drug or therapeutic vaccination. We aim to characterize both the infection dynamics and efficacy of the two drug treatments using the data from the PBMC (peripheral blood mononuclear cell) associated viremia titers of CDV infected ferrets and the lymphocyte counts measured during the duration of the study. A differential mathematical model was fitted to the experimental data by minimizing the sum of squared residuals (SSR), and errors in the parameter fits were estimated using Monte Carlo Markov Chain (MCMC). We visualized the key parameter distributions for each dataset using histograms, allowing us to directly compare how each treatment influences infection dynamics. The results revealed that ERDRP-0519 reduced viral entry and enhanced clearance while GHP-88309 improved target cell growth and increased the rate of infected cell death. These findings suggest that both drugs are potentially effective measles treatment options, with ERDRP-0519 having a direct antiviral effect and GHP-88309 aiding in immune recovery. Overall, these insights provide a foundation for optimizing treatment strategies and highlight the potential for both drugs to combat measles and related morbillivirus infections, especially in areas with limited resources and vaccines.
PHYS2025MAKAM7964 PHYS
Type: Undergraduate
Author(s):
Shriya Makam
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: Basement, Table 11, Position 1, 1:45-3:45
View PresentationGliomas account for approximately 27% of all primary central nervous system tumors and exhibit highly aggressive growth patterns, making conventional treatments ineffective. Previous research has demonstrated that a replication-competent Sindbis virus (SINV) combined with cytokines (IL-7, IL-12, and GM-CSF) shows promising results in slowing down glioma progression. While prior research demonstrated that SINV combined with cytokines reduces tumor growth, a quantitative understanding of its effects remains limited. This study aims to develop and fit a mathematical model of oncolytic virus infection to data from previous research to quantify key biological processes in glioma treatment. By parameterizing the Sindbis virus-glioma interaction and estimating the effects of cytokine therapy, this model aims to evaluate the efficacy of different SINV variants, with and without cytokine combinations, in controlling tumor growth. We use an Ordinary Differential Equation (ODE) model to describe tumor growth inhibition by the oncolytic SINVs. The model includes variables for uninfected and infected tumor cells, viral load, and cytokine concentration. The data extracted from published tumor growth curves will be used to estimate key parameters, including viral replication rate, tumor growth rate, and cytokine effects. Parameter fitting will be conducted by minimizing the Sum of Squared Residuals (SSR) between model predictions and experimental data. Error in the parameters will be estimated through bootstrapping to find the best fit parameters with 95% confidence intervals. Preliminary analysis suggests that the model effectively captures tumor growth rates observed in the experimental data. Parameter estimation provides insights into the viral infection rate, cytokine-induced tumor suppression, and the timing of viral injections. These findings will help refine our understanding of how the SINVs and cytokine therapy interact in glioma treatment. This study provides a quantitative framework for evaluating the therapeutic effects of an oncolytic SINV combined with cytokines in glioma treatment. By providing parameter estimates for key biological processes, our model can help optimize treatment strategies and guide future experimental research in oncolytic virotherapy.
PHYS2025MATTHEWS49228 PHYS
Type: Undergraduate
Author(s):
Page Matthews
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: Basement, Table 2, Position 2, 11:30-1:30
View PresentationMathematical modeling of viral kinetics can be used to gain further insight into the viral replication cycle and virus-host interactions. However, many virus dynamics models do not incorporate the cell-to-cell heterogeneity of virus yield or the time-dependent factor of virus production. A recent study of the kinetics of the vesicular stomatitis virus (VSV) in single BHK cells determined that both the virus production rate and the yield of virus particles vary widely between individual cells of the same cell population. We used the results of this study to determine the distribution that best describes the time course of viral production within single cells. The best distribution was then used to incorporate time-varying production into a standard model of viral kinetics. The best-fit model was determined by fitting potential distributions to cumulative viral production from single cells and comparing the Akaike Information Criterion (AIC). The results show that the best fit for most cells was log-normal. Time-dependent viral production was modeled with an integro-differential equation that incorporated the log-normal probability distribution into a standard constant production model of viral kinetics. This time-dependent model was compared to one of constant production by examining the differences between the viral peak, time of the peak, upslope, downslope, and area under the curve. These findings could have further-reaching implications for helping define the time course and nature of a particular virus infection within the human body as well as improving the dose-timing and efficacy of anti-viral treatments.
PHYS2025MCCARTHY52951 PHYS
Type: Undergraduate
Author(s):
Gabriel McCarthy
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: Third Floor, Table 7, Position 1, 11:30-1:30
View PresentationSyncytia are multinucleated cells that can occur due to virus infection of cells. Mathematical models in the form of ordinary differential equations can be used to simulate the growth of syncytia. Several novel ODE models can explain syncytia growth. Before employing these models on actual data, it is essential to analyze their structural (theoretical) and practical identifiability using computer software. Structural identifiability is an inherent property of each model and its parameters, referring to our ability to determine parameter values for the model given particular experimental measurements. Practical Identifiability analysis of a model is concerned with determining our ability to accurately determine parameter values given experimental error. Combining these two techniques enables us to determine whether or not the parameters of our syncytia models can be accurately determined. Obtaining accurate parameter values allows us to make conclusions about our data that can provide insight into the nature of the spread of syncytia. From this, we can plan experiments to parameterize the syncytia growth in the contexts of our models.
PHYS2025MCCARTHY8679 PHYS
Type: Undergraduate
Author(s):
Gabriel McCarthy
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: Basement, Table 12, Position 1, 1:45-3:45
View PresentationMpox virus is a type of virus similar to smallpox that can cause diseases in humans. Several experiments have been done to collect data on how mpox evolves within an infected host. This data can be analyzed within the context of mathematical models to determine important characteristics of mpox. From this analysis, we can estimate the growth rate, reproduction number, and infecting time of mpox. We can also construct confidence intervals to estimate the error in our predictions using bootstrapping. Bootstrapping allows us to analyze parameter correlations within mpox data to understand how parameter values within the model affect each other in our model. From these values and confidence intervals, we can learn about how mpox evolves within the body over time. This information, in turn, may allow us to make predictions on how mpox evolves within people during infection that could inform future treatment regimens.
PHYS2025MCHENRY44144 PHYS
Type: Undergraduate
Author(s):
Tiffany McHenry
Physics & Astronomy
John Brannon
Physics & Astronomy
Dustin Johnson
Physics & Astronomy
Devansh Matham
Physics & Astronomy
Advisor(s):
Yuri Strzhemechny
Physics & Astronomy
Location: Basement, Table 7, Position 2, 1:45-3:45
View PresentationIron zinc oxides are multifunctional materials with applications in luminescent devices, catalysis, spintronics, and gas sensors. Specifically, iron-doped zinc oxide (FeZnO) combines magnetic and chemical stability properties, making it suitable for technological and environmental applications. This study explores how synthesis parameters, including pH and dopant concentration, influence the morphology and properties of FeZnO nanoparticles. Hydrothermal synthesis was employed to prepare FeZnO with iron doping concentrations ranging from 1–10% and ZnO. Morphological and compositional analyses were performed using scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDX). We also observed doped FeZnO antibacterial action for some of the synthesized samples in e-coli cultures. Future work will focus on improving dopant distribution, exploring antibacterial activity, and leveraging computational tools to refine material design for specific applications.
PHYS2025OTTO52545 PHYS
Type: Graduate
Author(s):
Jonah Otto
Physics & Astronomy
Natalie Myers
Physics & Astronomy
Advisor(s):
Peter Frinchaboy
Physics & Astronomy
Location: Basement, Table 5, Position 2, 11:30-1:30
View PresentationStar clusters are incredibly useful tools in the pursuit of understanding our Universe better. They can be used to discover how our Galaxy, the Milky Way, formed and evolved over time, delve into the secrets of how stars form and even track how the different chemistry around our Galaxy. However, determining whether a group of stars is truly a star cluster or just a group of stars is a difficult task. In this poster, we will go over what a star cluster is, how we determine membership of the star cluster and the current work we are doing to investigate galactic chemical abundance gradients using star clusters.
PHYS2025PADMASOLALA6496 PHYS
Type: Undergraduate
Author(s):
Raghav Padmasolala
Physics & Astronomy
Advisor(s):
Hana Dobrovolny
Physics & Astronomy
Location: Third Floor, Table 5, Position 2, 11:30-1:30
View PresentationOncolytic Herpes Simplex Viruses (oHSVs) target a wide range of different cells and specific mutations, allowing them to proliferate in tumor cells. Recent work has modified the virus to preferentially enter cells bearing epidermal growth factor receptors (EGFRs). This study focuses on characterizing the efficacy of different strains of EGFR-targeting oHSV by fitting a mathematical model that includes an interferon response to experimental data from U251 tumor-bearing mice. Using a combination of parameter fitting, optimization techniques, and ordinary differential equations (ODEs), we modeled tumor growth, viral dynamics, and immune response. Our findings suggest that an interferon-inclusive model best explains the growth and oHSV treatment of EGFR-bearing tumors. These results highlight the importance of immune interactions in oncolytic viral therapy and contribute to optimizing oHSV-based treatments for better clinical outcomes.
PHYS2025PAUL00002 PHYS
Type: Undergraduate
Author(s):
Himish Paul
Physics & Astronomy
Advisor(s):
Location: Third Floor, Table 1, Position 1, 11:30-1:30
View PresentationAmong the most life-threatening diseases, cancer poses a major issue and affects over fifty million people worldwide. To overcome the challenges associated with conventional chemotherapy, affecting both cancerous and normal cells, here we develop folic acid-functionalized Graphene Quantum Dots (GQDs) targeted to folate receptors overexpressed in a variety of cancer cell lines. GQDs due to their high biocompatibility and intrinsic fluorescence-based imaging capabilities have recently emerged as promising theragnostic agents. In this project, we synthesized GQDs utilizing the bottom up synthesis method and functionalized them with folic acid. The efficacy of the Folic acid functionalized GQDs (FAGQDs) is evaluated through their internalization study in cancerous (HeLa) and normal (HEK-293) cells by utilizing the intrinsic fluorescence of FAGQDs.
PHYS2025PHAM49939 PHYS
Type: Undergraduate
Author(s):
Danh Pham
Physics & Astronomy
Bong Lee
Physics & Astronomy
Advisor(s):
Zygmunt Gryczynski
Physics & Astronomy
Ignacy Gryczynski
Physics & Astronomy
Location: FirstFloor, Table 1, Position 2, 1:45-3:45
View PresentationThe use of fluorescent compounds as biological markers or probes is widely used in assays for probing various properties, including but not limited to pH, temperature, or the presence of various proteins. This has allowed fluorescence to enter the fields of microscopy, diagnostics, and spectroscopy. Among the many dyes used for such applications are those that exhibit phosphorescence. Unlike fluorescence, which has a lifetime of several nanoseconds, phosphorescence lifetimes can be several seconds, allowing for the use of techniques such as gated detection, which can eliminate distracting background noise or Raman scattering. Since phosphorescence uses the triplet state rather than the singlet state, it requires less energy, which correlates with longer wavelengths. The phosphorescence emission of some dyes can extend from 425nm (blue) to 675nm (red), which encompasses almost the entire visible spectrum. This is especially useful when considering that longer wavelengths may be used when utilizing direct triplet state excitation, which allows for excitation wavelengths well into the visible range. The ability to utilize longer excitation wavelengths has numerous possibilities, among which include being safe to use with live cells, which opens the door for using phosphorescence as a technique for biological imaging. Not only does phosphorescence allow imaging to occur at longer wavelengths, which mitigates damage to cells and minimizes exposure to harmful ultraviolet radiation, but it also allows for much more affordable equipment and procedures, possibly making diagnostic care more accessible.